PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G29950.2
Common NameBHLH144, EN130, F1N18.24, T1P2.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 251aa    MW: 27822.1 Da    PI: 4.4358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G29950.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000411992351354
                  HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R+++++ +  Lr+++P       + ++ a +L +Av+Y+ksL
  AT1G29950.2 199 RKKMKKMMGVLRRIVPGG-----EQMNTACVLDEAVQYLKSL 235
                  899*************95.....68***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.81186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-7199245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-6199242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MQNNQFPHFS DEVGDRNMHN PYASGSSYDA LFPPCAKLPY HGVELQPSAV CPKNFVIFDQ  60
TYDRSQVMYH PELTHKLMNT PSLNNLASTF QNEYVGGSYG NYGNYEQEVS SSYQEDPNEI  120
DALLSADEDY EENDDNEGEE DGGDSEEVST ARTSSRDYGN TTAESCCSSY GYNNNNNNNS  180
RKQSLSGSAS SSNNDGKGRK KMKKMMGVLR RIVPGGEQMN TACVLDEAVQ YLKSLKIEAQ  240
KLGVGHFSNQ S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197205GRKKMKKMM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.433710.0bud| flower| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible260027_at0.0
Expression AtlasAT1G29950-
AtGenExpressAT1G29950-
ATTED-IIAT1G29950-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G29950.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G29950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0080300.0AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence.
GenBankAC0224550.0AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBankAF3616070.0AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBankAK2303740.0AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05.
GenBankAK3187020.0AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13.
GenBankAY0748430.0AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564342.10.0conserved peptide upstream open reading frame 35
RefseqNP_973937.10.0conserved peptide upstream open reading frame 35
SwissprotQ9ASX90.0BH144_ARATH; Transcription factor bHLH144
TrEMBLC0Z2880.0C0Z288_ARATH; AT1G29950 protein
STRINGAT1G29950.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  2. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  5. Ehlting J, et al.
    Global transcript profiling of primary stems from Arabidopsis thaliana identifies candidate genes for missing links in lignin biosynthesis and transcriptional regulators of fiber differentiation.
    Plant J., 2005. 42(5): p. 618-40
    [PMID:15918878]
  6. Ohashi-Ito K,Bergmann DC
    Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY.
    Development, 2007. 134(16): p. 2959-68
    [PMID:17626058]
  7. Hayden CA,Jorgensen RA
    Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes.
    BMC Biol., 2007. 5: p. 32
    [PMID:17663791]